EasyMultiProfiler
Tutorial
Chapter 1 Introduction
1.1 Installation and update
1.2 basic information
Chapter 2 Import data
2.1 Multi-omics data
2.2 Single-omics data
2.3 Save and load data
2.4 Demo data and script
Chapter 3 Demo data
3.1 Load MAE
3.2 Summary MAE
Chapter 4 Data Extract
4.1 EMP_assay_extract
4.2 EMP_rowdata_extract
4.3 EMP_coldata_extract
Chapter 5 Data Preparation
5.1 EMP_collapse
5.2 EMP_adjust_abudance
5.3 EMP_feature_convert
5.4 EMP_decostand
5.5 EMP_impute
5.6 EMP_identify_assay
5.7 EMP_modify_assay
5.8 EMP_rrarefy
Chapter 6 Data Analysis
6.1 EMP_alpha_analysis
6.2 EMP_cluster_analysis
6.3 EMP_cor_analysis
6.4 EMP_diff_analysis
6.5 EMP_dimension_analysis
6.6 EMP_enrich_analysis
6.7 EMP_marker_analysis
6.8 EMP_GSEA_analysis
6.9 EMP_WGCNA_cluster_analysis
6.10 EMP_WGCNA_cor_analysis
6.11 EMP_multi_analysis
6.12 EMP_nework_analysis
Chapter 7 Data support
7.1 EMP_filter
7.2 EMP_history
7.3 EMP_result
7.4 EMP_summary
7.5 EMP_saver_var
7.6 EMP_taxonomy_import
7.7 EMP_function_import
7.8 EMP_normal_import
7.9 EMP_easy_import
Chapter 8 Data Virtualization
8.1 EMP_boxplot
8.2 EMP_scatterplot
8.3 EMP_enrich_dotplot
8.4 EMP_enrich_netplot
8.5 EMP_fitline_plot
8.6 EMP_GSEA_plot
8.7 EMP_heatmap_plot
8.8 EMP_sankey_plot
8.9 EMP_structure_plot
8.10 EMP_volcanol_plot
8.11 EMP_network_plot
Chapter 9 More Useful Tools
9.1 str_detect_multi
9.2 EMP_to_EMP1
9.3 top_detect
Chapter 10 More Examples
10.1 Meta data modified
10.2 Experiment data
10.3 Paired test and intervention cohort
10.4 Full taxonomy annotation
10.5 Installation issues
Contact
Published with GitBook
7.9 EMP_easy_import
7.8 EMP_easy_import
Detailed in Section 2.2.
results matching "
"
No results matching "
"